Execute SQL Query with PostgreSQL API on New Run Created from Seqera API

Pipedream makes it easy to connect APIs for PostgreSQL, Seqera and 2,400+ other apps remarkably fast.

Trigger workflow on

New Run Created from the Seqera API

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Execute SQL Query with the PostgreSQL API

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Getting Started#

This integration creates a workflow with a Seqera trigger and PostgreSQL action. When you configure and deploy the workflow, it will run on Pipedream's servers 24x7 for free.

Select this integration
Configure the New Run Created trigger
1. Connect your Seqera account
2. Configure Polling Schedule
3. Select a Workspace ID
Configure the Execute SQL Query action
1. Connect your PostgreSQL account
2. Configure PostreSQL Query
Deploy the workflow
Send a test event to validate your setup
Turn on the trigger

Details#

This integration uses pre-built, source-available components from Pipedream's GitHub repo. These components are developed by Pipedream and the community, and verified and maintained by Pipedream.

To contribute an update to an existing component or create a new component, create a PR on GitHub. If you're new to Pipedream component development, you can start with quickstarts for trigger span and action development, and then review the component API reference.

Trigger#

New Run Created on Seqera

Description:Emit new event when a new run is created in Seqera. [See the documentation](https://docs.seqera.io/platform/23.3.0/api/overview)

Version:0.0.2

Key:seqera-new-run-created

View on GitHub

Seqera Overview#

The Seqera API serves as a connection point for handling complex data pipeline and workflow orchestration tasks within the life sciences domain. With this API, you can manage workflows, monitor pipeline executions, and control job submissions. Leveraging Pipedream, you can seamlessly integrate Seqera with various services to automate processes, react to pipeline events, or synchronize data across platforms, thus enhancing efficiency in bioinformatics analysis.

Trigger Code#

import { DEFAULT_POLLING_SOURCE_TIMER_INTERVAL } from "@pipedream/platform";
import app from "../../seqera.app.mjs";

export default {
  key: "seqera-new-run-created",
  name: "New Run Created",
  description: "Emit new event when a new run is created in Seqera. [See the documentation](https://docs.seqera.io/platform/23.3.0/api/overview)",
  version: "0.0.2",
  type: "source",
  dedupe: "unique",
  props: {
    app,
    timer: {
      type: "$.interface.timer",
      label: "Polling Schedule",
      description: "How often to poll the API",
      default: {
        intervalSeconds: DEFAULT_POLLING_SOURCE_TIMER_INTERVAL,
      },
    },
    workspaceId: {
      propDefinition: [
        app,
        "workspaceId",
      ],
      optional: false,
    },
  },
  methods: {
    getResourceName() {
      return "workflows";
    },
    getResourcesFn() {
      return this.app.listWorkflows;
    },
    getResourcesFnArgs() {
      return {
        workspaceId: this.workspaceId,
      };
    },
    generateMeta({ workflow }) {
      return {
        id: workflow.id,
        summary: `New Run: ${workflow.id}`,
        ts: Date.parse(workflow.dateCreated),
      };
    },
    processResource(resource) {
      const meta = this.generateMeta(resource);
      this.$emit(resource, meta);
    },
  },
  async run() {
    const {
      app,
      getResourcesFn,
      getResourcesFnArgs,
      getResourceName,
      processResource,
    } = this;

    const resources = await app.paginate({
      resourcesFn: getResourcesFn(),
      resourcesFnArgs: getResourcesFnArgs(),
      resourceName: getResourceName(),
    });

    Array.from(resources)
      .reverse()
      .forEach(processResource);
  },
};

Trigger Configuration#

This component may be configured based on the props defined in the component code. Pipedream automatically prompts for input values in the UI and CLI.

Label	Prop	Type	Description
Seqera	`app`	`app`	This component uses the Seqera app.
Polling Schedule	`timer`	`$.interface.timer`	How often to poll the API
Workspace ID	`workspaceId`	`string`	Select a value from the drop down menu.

Trigger Authentication#

Seqera uses API keys for authentication. When you connect your Seqera account, Pipedream securely stores the keys so you can easily authenticate to Seqera APIs in both code and no-code steps.

About Seqera#

One platform for scientific data analysis.

Action#

Execute SQL Query on PostgreSQL

Description:Execute a custom PostgreSQL query. See [our docs](https://pipedream.com/docs/databases/working-with-sql) to learn more about working with SQL in Pipedream.

Version:3.0.1

Key:postgresql-execute-custom-query

View on GitHub

PostgreSQL Overview#

On Pipedream, you can leverage the PostgreSQL app to create workflows that automate database operations, synchronize data across platforms, and react to database events in real-time. Think handling new row entries, updating records from webhooks, or even compiling reports on a set schedule. Pipedream's serverless platform provides a powerful way to connect PostgreSQL with a variety of apps, enabling you to create tailored automation that fits your specific needs.

Action Code#

import postgresql from "../../postgresql.app.mjs";

export default {
  name: "Execute SQL Query",
  key: "postgresql-execute-custom-query",
  description: "Execute a custom PostgreSQL query. See [our docs](https://pipedream.com/docs/databases/working-with-sql) to learn more about working with SQL in Pipedream.",
  version: "3.0.1",
  type: "action",
  props: {
    postgresql,
    // eslint-disable-next-line pipedream/props-description
    sql: {
      type: "sql",
      auth: {
        app: "postgresql",
      },
      label: "PostreSQL Query",
    },
  },
  async run({ $ }) {
    const args = this.postgresql.executeQueryAdapter(this.sql);
    const data = await this.postgresql.executeQuery(args);
    $.export("$summary", `Returned ${data.length} ${data.length === 1
      ? "row"
      : "rows"}`);
    return data;
  },
};

Action Configuration#

This component may be configured based on the props defined in the component code. Pipedream automatically prompts for input values in the UI.

Label	Prop	Type	Description
PostgreSQL	`postgresql`	`app`	This component uses the PostgreSQL app.
PostreSQL Query	`sql`	`sql`

Action Authentication#

PostgreSQL uses API keys for authentication. When you connect your PostgreSQL account, Pipedream securely stores the keys so you can easily authenticate to PostgreSQL APIs in both code and no-code steps.

Connecting to Restricted Databases

Either enable the shared static IP for this account below, or configure a VPC to deploy any workflow in your workspace to a private network with a dedicated static IP. Learn more in our docs.

SSL Setup

Configure SSL on your PostgreSQL database by providing the CA (Certificate Authority), and choosing between Full Verification, Verify Certificate Authority (CA), or Skip Verification. Skipping verification is not recommended as this has serious security implications.