Create Compute Environment with Seqera API on Custom Interval from Schedule API

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Trigger workflow on

Custom Interval from the Schedule API

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Create Compute Environment with the Seqera API

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Getting Started#

This integration creates a workflow with a Schedule trigger and Seqera action. When you configure and deploy the workflow, it will run on Pipedream's servers 24x7 for free.

Select this integration
Configure the Custom Interval trigger
1. Connect your Schedule account
2. Configure Cron Schedule
Configure the Create Compute Environment action
1. Connect your Seqera account
2. Configure Name
3. Optional- Configure Description
4. Select a Platform ID
5. Optional- Select a Workspace ID
6. Optional- Select a Credentials ID
7. Optional- Configure Configuration
Deploy the workflow
Send a test event to validate your setup
Turn on the trigger

Details#

This integration uses pre-built, source-available components from Pipedream's GitHub repo. These components are developed by Pipedream and the community, and verified and maintained by Pipedream.

To contribute an update to an existing component or create a new component, create a PR on GitHub. If you're new to Pipedream component development, you can start with quickstarts for trigger span and action development, and then review the component API reference.

Trigger#

Custom Interval on Schedule

Description:Trigger your workflow every N hours, minutes or seconds.

Version:0.0.2

Key:schedule-custom-interval

View on GitHub

Schedule Overview#

The Schedule app in Pipedream is a powerful tool that allows you to trigger workflows at regular intervals, ranging from every minute to once a year. This enables the automation of repetitive tasks and the scheduling of actions to occur without manual intervention. By leveraging this API, you can execute code, run integrations, and process data on a reliable schedule, all within Pipedream's serverless environment.

Trigger Code#

import schedule from "../../schedule.app.mjs";

export default {
  name: "Custom Interval",
  version: "0.0.2",
  key: "schedule-custom-interval",
  type: "source",
  description: "Trigger your workflow every N hours, minutes or seconds.",
  props: {
    schedule,
    cron: {
      propDefinition: [
        schedule,
        "cron",
      ],
    },
  },
};

Trigger Configuration#

This component may be configured based on the props defined in the component code. Pipedream automatically prompts for input values in the UI and CLI.

Label	Prop	Type	Description
Schedule	`schedule`	`app`	This component uses the Schedule app.
Cron Schedule	`cron`	`$.interface.timer`	Enter a cron expression

Trigger Authentication#

The Schedule API does not require authentication.

About Schedule#

Trigger workflows on an interval or cron schedule.

Action#

Create Compute Environment on Seqera

Description:Creates a new compute environment in Seqera Tower. [See the documentation](https://docs.seqera.io/platform/23.3.0/api/overview)

Version:0.0.3

Key:seqera-create-compute-environment

View on GitHub

Seqera Overview#

The Seqera API serves as a connection point for handling complex data pipeline and workflow orchestration tasks within the life sciences domain. With this API, you can manage workflows, monitor pipeline executions, and control job submissions. Leveraging Pipedream, you can seamlessly integrate Seqera with various services to automate processes, react to pipeline events, or synchronize data across platforms, thus enhancing efficiency in bioinformatics analysis.

Action Code#

import utils from "../../common/utils.mjs";
import app from "../../seqera.app.mjs";

export default {
  key: "seqera-create-compute-environment",
  name: "Create Compute Environment",
  description: "Creates a new compute environment in Seqera Tower. [See the documentation](https://docs.seqera.io/platform/23.3.0/api/overview)",
  version: "0.0.3",
  annotations: {
    destructiveHint: false,
    openWorldHint: true,
    readOnlyHint: false,
  },
  type: "action",
  props: {
    app,
    name: {
      description: "A unique name for this compute environment. Use only alphanumeric, dash, and underscore characters. Eg. `My-Env_1`",
      propDefinition: [
        app,
        "name",
      ],
    },
    description: {
      description: "The description of the compute environment.",
      optional: true,
      propDefinition: [
        app,
        "description",
      ],
    },
    platformId: {
      propDefinition: [
        app,
        "platformId",
      ],
    },
    workspaceId: {
      propDefinition: [
        app,
        "workspaceId",
      ],
    },
    credentialsId: {
      optional: true,
      propDefinition: [
        app,
        "credentialsId",
        ({
          platformId, workspaceId,
        }) => ({
          platformId,
          workspaceId,
        }),
      ],
    },
    config: {
      type: "object",
      label: "Configuration",
      description: "The configuration of the compute environment. For the model reference look [here](https://tower.nf/openapi/index.html#post-/compute-envs).",
      optional: true,
    },
  },
  methods: {
    createComputeEnv(args = {}) {
      return this.app.post({
        path: "/compute-envs",
        ...args,
      });
    },
  },
  async run({ $ }) {
    const {
      createComputeEnv,
      name,
      platformId,
      description,
      config,
      credentialsId,
    } = this;

    const response = await createComputeEnv({
      $,
      data: {
        computeEnv: {
          name,
          platform: platformId,
          description,
          config: utils.parseProp(config),
          credentialsId,
        },
      },
    });

    $.export("$summary", `Successfully created compute environment with ID \`${response.computeEnvId}\``);

    return response;
  },
};

Action Configuration#

This component may be configured based on the props defined in the component code. Pipedream automatically prompts for input values in the UI.

Label	Prop	Type	Description
Seqera	`app`	`app`	This component uses the Seqera app.
Name	`name`	`string`	A unique name for this compute environment. Use only alphanumeric, dash, and underscore characters. Eg. `My-Env_1`
Description	`description`	`string`	The description of the compute environment.
Platform ID	`platformId`	`string`	Select a value from the drop down menu.
Workspace ID	`workspaceId`	`string`	Select a value from the drop down menu.
Credentials ID	`credentialsId`	`string`	Select a value from the drop down menu.
Configuration	`config`	`object`	The configuration of the compute environment. For the model reference look here