Integrate the Rat Genome Database API with the Bash API

Setup the Rat Genome Database API trigger to run a workflow which integrates with the Bash API. Pipedream's integration platform allows you to integrate Rat Genome Database and Bash remarkably fast. Free for developers.

Popular Rat Genome Database and Bash Actions#

Run Bash Code with the Bash API

Run any Bash in a Pipedream step within your workflow. Refer to the Pipedream Bash docs to learn more.

Try it

Overview of Rat Genome Database#

The Rat Genome Database (RGD) API provides access to a wealth of genetic and genomic data related to rats, a key model organism in medical research. Via this API, researchers can query for gene information, phenotypic data, and genomic sequences, creating a treasure trove for geneticists, bioinformaticians, and medical researchers seeking to understand disease pathways and potential treatments. On Pipedream, this can be leveraged to automate data retrieval, sync genetic information with other databases, or trigger workflows based on specific genomic updates or criteria.

Connect Rat Genome Database#

import { axios } from "@pipedream/platform"
export default defineComponent({
  props: {
    rat_genome_database: {
      type: "app",
      app: "rat_genome_database",
    }
  },
  async run({steps, $}) {
    return await axios($, {
      url: `https://rest.rgd.mcw.edu/rgdws/lookup/geneTypes`,
      headers: {
        "Accept": `*/*`,
      },
    })
  },
})

Connect Bash#

# $PIPEDREAM_STEPS file contains data from previous steps
cat $PIPEDREAM_STEPS | jq .trigger.context.id

# Write data to $PIPEDREAM_EXPORTS to return it from the step
# Exports must be written as key=value
echo foo=bar >> $PIPEDREAM_EXPORTS