Integrate the Seqera API with the AWS API

Setup the Seqera API trigger to run a workflow which integrates with the AWS API. Pipedream's integration platform allows you to integrate Seqera and AWS remarkably fast. Free for developers.

Popular Ways to Connect Seqera with AWS#

Create Compute Environment with Seqera API on New Scheduled Tasks from AWS API

AWS + Seqera

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Create Compute Environment with Seqera API on New SNS Messages from AWS API

AWS + Seqera

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Create Pipeline Action with Seqera API on New Scheduled Tasks from AWS API

AWS + Seqera

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Create Pipeline Action with Seqera API on New SNS Messages from AWS API

AWS + Seqera

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Create Pipeline with Seqera API on New Scheduled Tasks from AWS API

AWS + Seqera

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Popular Seqera and AWS Triggers#

New Scheduled Tasks from the AWS API

Creates a Step Function State Machine to publish a message to an SNS topic at a specific timestamp. The SNS topic delivers the message to this Pipedream source, and the source emits it as a new event.

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New SNS Messages from the AWS API

Creates an SNS topic in your AWS account. Messages published to this topic are emitted from the Pipedream source.

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New Inbound SES Emails from the AWS API

The source subscribes to all emails delivered to a specific domain configured in AWS SES. When an email is sent to any address at the domain, this event source emits that email as a formatted event. These events can trigger a Pipedream workflow and can be consumed via SSE or REST API.

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New Run Created from the Seqera API

Emit new event when a new run is created in Seqera. See the documentation

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New Deleted S3 File from the AWS API

Emit new event when a file is deleted from a S3 bucket

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Popular Seqera and AWS Actions#

Create Compute Environment with the Seqera API

Creates a new compute environment in Seqera Tower. See the documentation

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Create Pipeline with the Seqera API

Creates a new pipeline in a user context. See the documentation

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Create Pipeline Action with the Seqera API

Creates a new pipeline action in Seqera. See the documentation

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CloudWatch Logs - Put Log Event with the AWS API

Uploads a log event to the specified log stream. See docs

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DynamoDB - Create Table with the AWS API

Creates a new table to your account. See docs

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Overview of Seqera#

The Seqera API serves as a connection point for handling complex data pipeline and workflow orchestration tasks within the life sciences domain. With this API, you can manage workflows, monitor pipeline executions, and control job submissions. Leveraging Pipedream, you can seamlessly integrate Seqera with various services to automate processes, react to pipeline events, or synchronize data across platforms, thus enhancing efficiency in bioinformatics analysis.

Connect Seqera#

import { axios } from "@pipedream/platform"
export default defineComponent({
  props: {
    seqera: {
      type: "app",
      app: "seqera",
    }
  },
  async run({steps, $}) {
    return await axios($, {
      url: `https://api.tower.nf/user-info`,
      headers: {
        Authorization: `Bearer ${this.seqera.$auth.api_token}`,
      },
    })
  },
})

Overview of AWS#

The AWS API unlocks endless possibilities for automation with Pipedream. With this powerful combo, you can manage your AWS services and resources, automate deployment workflows, process data, and react to events across your AWS infrastructure. Pipedream offers a serverless platform for creating workflows triggered by various events that can execute AWS SDK functions, making it an efficient tool to integrate, automate, and orchestrate tasks across AWS services and other apps.

Connect AWS#

import AWS from 'aws-sdk'

export default defineComponent({
  props: {
    aws: {
      type: "app",
      app: "aws",
    }
  },
  async run({steps, $}) {
    const { accessKeyId, secretAccessKey } = this.aws.$auth
    
    /* Now, pass the accessKeyId and secretAccessKey to the constructor for your desired service. For example:
    
    const dynamodb = new AWS.DynamoDB({
      accessKeyId, 
      secretAccessKey,
      region: 'us-east-1',
    })
    
    */
  },
})