Integrate the Rat Genome Database API with the MongoDB API

Setup the Rat Genome Database API trigger to run a workflow which integrates with the MongoDB API. Pipedream's integration platform allows you to integrate Rat Genome Database and MongoDB remarkably fast. Free for developers.

Popular Rat Genome Database and MongoDB Triggers#

New Collection from the MongoDB API

Emit new an event when a new collection is added to a database

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New Database from the MongoDB API

Emit new an event when a new database is added

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New Document from the MongoDB API

Emit new an event when a new document is added to a collection

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New Field in Document from the MongoDB API

Emit new an event when a new field is added to a document

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Popular Rat Genome Database and MongoDB Actions#

Create New Document with the MongoDB API

Create a new document in a collection of your choice. See the docs here

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Delete a Document with the MongoDB API

Delete a single document by ID. See the docs here

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Execute Aggregation with the MongoDB API

Execute an aggregation pipeline on a MongoDB collection. See the documentation

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Find Document with the MongoDB API

Finds a document by a query filter. See the documentation

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Find Document by Id with the MongoDB API

Retrieves a single document by ID. See the docs here

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Overview of Rat Genome Database#

The Rat Genome Database (RGD) API provides access to a wealth of genetic and genomic data related to rats, a key model organism in medical research. Via this API, researchers can query for gene information, phenotypic data, and genomic sequences, creating a treasure trove for geneticists, bioinformaticians, and medical researchers seeking to understand disease pathways and potential treatments. On Pipedream, this can be leveraged to automate data retrieval, sync genetic information with other databases, or trigger workflows based on specific genomic updates or criteria.

Connect Rat Genome Database#

import { axios } from "@pipedream/platform"
export default defineComponent({
  props: {
    rat_genome_database: {
      type: "app",
      app: "rat_genome_database",
    }
  },
  async run({steps, $}) {
    return await axios($, {
      url: `https://rest.rgd.mcw.edu/rgdws/lookup/geneTypes`,
      headers: {
        "Accept": `*/*`,
      },
    })
  },
})

Overview of MongoDB#

The MongoDB API provides powerful capabilities to interact with a MongoDB database, allowing you to perform CRUD (Create, Read, Update, Delete) operations, manage databases, and execute sophisticated queries. With Pipedream, you can harness these abilities to automate tasks, sync data across various apps, and react to events in real-time. It’s a combo that’s particularly potent for managing data workflows, syncing application states, or triggering actions based on changes to your data.

Connect MongoDB#

import mongodb from 'mongodb'

export default defineComponent({
  props: {
    mongodb: {
      type: "app",
      app: "mongodb",
    },
    collection: {
      type: "string"
    },
    filter: {
      type: "object"
    }
  },
  async run({steps, $}) {
    const MongoClient = mongodb.MongoClient
    
    const {
      database,
      hostname,
      username,
      password,
    } = this.mongodb.$auth
    
    const url = `mongodb+srv://${username}:${password}@${hostname}/test?retryWrites=true&w=majority`
    const client = await MongoClient.connect(url, { 
      useNewUrlParser: true, 
      useUnifiedTopology: true 
    })
    
    const db = client.db(database)

    const results = await db.collection(this.collection).find(this.filter).toArray();
    $.export('results', results);
    
    await client.close()
  },
})