The Rat Genome Database (RGD) was established in 1999 and is the premier site for genetic, genomic, phenotype, and disease data generated from rat research
Create a new document in a collection of your choice. See the docs here
Execute an aggregation pipeline on a MongoDB collection. See the documentation
The Rat Genome Database (RGD) API provides access to a wealth of genetic and genomic data related to rats, a key model organism in medical research. Via this API, researchers can query for gene information, phenotypic data, and genomic sequences, creating a treasure trove for geneticists, bioinformaticians, and medical researchers seeking to understand disease pathways and potential treatments. On Pipedream, this can be leveraged to automate data retrieval, sync genetic information with other databases, or trigger workflows based on specific genomic updates or criteria.
import { axios } from "@pipedream/platform"
export default defineComponent({
props: {
rat_genome_database: {
type: "app",
app: "rat_genome_database",
}
},
async run({steps, $}) {
return await axios($, {
url: `https://rest.rgd.mcw.edu/rgdws/lookup/geneTypes`,
headers: {
"Accept": `*/*`,
},
})
},
})
The MongoDB API provides powerful capabilities to interact with a MongoDB database, allowing you to perform CRUD (Create, Read, Update, Delete) operations, manage databases, and execute sophisticated queries. With Pipedream, you can harness these abilities to automate tasks, sync data across various apps, and react to events in real-time. It’s a combo that’s particularly potent for managing data workflows, syncing application states, or triggering actions based on changes to your data.
import mongodb from 'mongodb'
export default defineComponent({
props: {
mongodb: {
type: "app",
app: "mongodb",
},
collection: {
type: "string"
},
filter: {
type: "object"
}
},
async run({steps, $}) {
const MongoClient = mongodb.MongoClient
const {
database,
hostname,
username,
password,
} = this.mongodb.$auth
const url = `mongodb+srv://${username}:${password}@${hostname}/test?retryWrites=true&w=majority`
const client = await MongoClient.connect(url, {
useNewUrlParser: true,
useUnifiedTopology: true
})
const db = client.db(database)
const results = await db.collection(this.collection).find(this.filter).toArray();
$.export('results', results);
await client.close()
},
})